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Elimina 'code/matlab/H5_raster.m'

Stefano Diomedi 2 months ago
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commit
904b2392a6
1 changed files with 0 additions and 43 deletions
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      code/matlab/H5_raster.m

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code/matlab/H5_raster.m

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-% The script plots the neural and behavioural data contained in a .h5 file of the Diomedi et al., 2023 dataset
-% in the form of a raster plot
-% authors: Francesco E. Vaccari
-% date: 10/2022 
- 
-
-clear all; clc; close all;
-addpath('supportFunctions')
-currentFolder = pwd;
-parentFolder = fileparts(fileparts(currentFolder));
-[filename,path_folder_data] = uigetfile('*.h5','Select a h5 dataset',[parentFolder '\data']);
-
-str = '/DATA/unit_01'; %it can be either unitXX, unitXX/conditionYY or unitXX/conditionYY/trialZZ
-
-[spikes, markers, all_strings] = get_all_data_from_level_h5([path_folder_data filename],str); %extract data
-
-str2readmk = ['/DATA/unit_01/condition_01/trial_01/event_markers']; 
-
-marker_labels = h5readatt([path_folder_data filename],str2readmk,'Marker labels'); %extract names of event markers
-
-figure
-hold on
-for count = 1:length(spikes)
-    clmap = jet(length(markers{count}));
-    scatter(spikes{count},count,'|','k')
-    sz = 30;
-    c = linspace(1,10,length(markers{count}));
-    if count == length(spikes)
-        for mk = 1:size(markers{count},2)
-            tmp = scatter(markers{count}(mk),1*count,sz,clmap(mk,:),'filled','DisplayName',marker_labels{mk});
-            dots(mk) = tmp;
-        end
-    end
-    scatter(markers{count},ones(size(markers{count}))*count,sz,clmap,'filled')
-end
-hold off
-ylim([0 count+1])
-xlabel('Time (ms)')
-ylabel('Trial #')
-legend(dots,marker_labels)
-colormap(jet)
-title('Raster Plot')
-