'README.md' ändern

README.md

@@ -10,75 +10,59 @@ The repository contains the P-unit data sets. They are provided in the nixio for
 ## Example code to load the data of a cell: 
 
 
+-import the nixo package
 ```
-import the nixo pacakge
-
 import nixio as nix
-
 from matplotlib import pyplot as plt
-
 import numpy as np
 ```
 
-#- load cell, (works if you are in the cell folder)
+- load cell, (works if you are in the cell folder)
+```
 file = nix.File.open('2019-05-07-aq-invivo-1.nix', nix.FileMode.ReadOnly)
 b = file.blocks[0]
-
+```
 
 - choice of a beat multi_tag
-
 ```
 mt_nr = 1
-
 mt = b.multi_tags[mt_nr]
 ```
 
 - load the array of interes: hier the EOD of the fish and the spike times
 ```
 EOD = b.data_arrays['LocalEOD-1']
-
 spikes_all = b.data_arrays['Spikes-1']
-
 voltage = b.data_arrays['V-1']
 ```
 
 - slice the whole dataarray at with the bignning and the extend of the multitag
-
 ```
 eod = EOD.get_slice([mt.positions[:][mt_nr]], [mt.extents[:][mt_nr]], nix.DataSliceMode.Data)[:]
-
 spikes = spikes_all.get_slice([mt.positions[:][mt_nr]], [mt.extents[:][mt_nr]], nix.DataSliceMode.Data)[:] - mt.positions[:][mt_nr]
-
 volt = voltage.get_slice([mt.positions[:][mt_nr]], [mt.extents[:][mt_nr]], nix.DataSliceMode.Data)[:]
 ```
 
 - get the sampling
-
-`sampling = len(EOD.get_slice([0], [0.1], nix.DataSliceMode.Data)[:]) * 10`
+```
+sampling = len(EOD.get_slice([0], [0.1], nix.DataSliceMode.Data)[:]) * 10
+```
 
 - get the time array
-
-`time_array = np.arange(0, mt.extents[:][mt_nr], 1 / sampling)`
+```
+time_array = np.arange(0, mt.extents[:][mt_nr], 1 / sampling)
+```
 
 - example plot of a beat and the P-unit response
-
 ```
 fig, ax = plt.subplots(2, 1, sharex = True)
-
 ax[0].set_ylabel('mV')
-
 ax[0].plot(time_array, eod)
-
 ax[1].plot(time_array, volt)
-
 ax[1].set_ylabel('mV')
-
 ax[1].set_xlabel('Time [s]')
-
 ax[1].set_xlim(0,0.1)
-
 ax[1].scatter(spikes, np.ones(len(spikes))*np.max(volt))
-
 plt.show()
 ```