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@@ -1,2 +1,60 @@
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-# Arican_et_al_2023_sensorimotor_transformation
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+# Data Collection Description
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+## Title
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+
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+Mushroom body encodes behavioral decision
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+
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+## Overview
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+
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+This repository contains data collected during the experiments described in Arican et al. (2023). The data includes spike times and stimulation protocols for olfactory stimuli. Additionally, behavioral data and normalized PID recordings are provided.
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+
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+## Experimental Details
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+
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+### Stimulus Codes
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+- A = benzaldehyde
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+- B = 2-heptanone
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+- C = isoamyl acetate
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+- D = octanal
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+- E = control
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+- F = 1-hexanol
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+- G = trans-cinnamaldehyde
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+- H = 1-heptanol
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+- I = heptanal
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+- J = 1-pentanol
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+- K = 1-octanol
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+
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+### Ignored Codes
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+- L, M, N, O, and P do not encode olfactory stimuli and can be ignored.
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+
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+## Data Files
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+
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+### .mat Files
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+Each .mat file contains the following data in structs:
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+- Struct ending with _Ch5: Spike times in .times [s] with respective unit IDs in .codes
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+- Struct ending with _Ch31: Stimulus times in .times [s] with respective Stimulus IDs in .codes
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+- Struct ending with _Ch32: Exact stimulus onset and offset times [s] in .times with respective ID for on- and offset .codes.
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+ - 1 = stimulus onset
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+ - 0 = stimulus offset
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+
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+### Excel File
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+The Excel file contains the following behavioral data:
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+- Time [s]: Stimulus onset [s]
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+- Stimulus-ID: Stimuli of each trial (see above for codes)
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+- MLR: Behavioral output per trial (1: MLR; 0: no MLR)
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+- Animal-ID: Animal ID corresponding to .mat files (see Table S1)
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+- MLR-Time-[sec]: Beginning of MLR [s]
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+
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+### .pkl File
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+PID.pkl contains two normalized PID recordings (PIDID: PID33; PID34) averaged over 10 trials for ten different odors (Stimuli: see odor codes above). The column "PID" contains the values of odor intensity, and "Time" contains the respective timepoint.
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+- PID33: Recorded from the position of the cockroach head (4 cm from the outlet of the odor supply system)
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+- PID34: Recorded from the position of the antennal tip (directly at the outlet of the odor supply system)
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+
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+## General Notes
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+
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+- For further analysis, the exact onset and offset times have been shifted by 90 ms since the odor occurred only after 90 ms at the antennal tip. The behavioral onsets were also aligned to that shift during the analysis.
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+
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+---
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NawrotLab