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@@ -1,17 +1,16 @@
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# Collection of Resources for AIDAqc Pipeline
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-This repository contains various resources related to the [AIDAqc pipeline](git@github.com:Aswendt-Lab/AIDAqc.git) used in the following Publication: ***Automated quality control of small animal MR neuroimaging data***, DOI: tbd
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-
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+This repository contains various resources related to the [AIDAqc pipeline](git@github.com:Aswendt-Lab/AIDAqc.git) used in the following Publication: ***Automated quality control of small animal MR neuroimaging data***, DOI: tbd. Each subsection for code, input, output, and docs provides more detailed information for each folder or file.
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## Repository Structure:
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-- `code/`: Here, you can find the code for the AIDAqc pipeline.
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+- `code/`: Here, you can find all the code used for this publication. Detailed information is available in the README of the code folder.
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-- `input/`: This folder contains all datasets and other necessary data.
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+- `input/`: This folder contains all datasets and other necessary data. More detailed information regarding each dataset can be found in the respective subfolders.
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-- `output/`: Within this directory, you'll locate the final results generated by the [AIDAqc](https://github.com/Aswendt-Lab/AIDAqc) pipeline for each dataset.
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+- `output/`: Within this directory, you'll locate the final results generated by the [AIDAqc](https://github.com/Aswendt-Lab/AIDAqc) pipeline for each dataset. Detailed information for each dataset's output can be found in their respective subfolders.
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-- `docs/`: For additional documentation related to this project, including extra resources, you can access it via this [link](https://github.com/Aswendt-Lab/MRI_Standardization_AIDAqc) or through the README file.
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+- `docs/`: For additional documentation related to this project, including extra resources, you can access it via this [link](https://github.com/Aswendt-Lab/MRI_Standardization_AIDAqc) or through the README file within this folder.
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## Additional Information:
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@@ -21,4 +20,4 @@ This structured dataset was created with reference to the following publication:
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If you have any questions or need further assistance, please feel free to contact us. # 2023_Kalantari_AIDAqc
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-Additional information regarding each folder and files in the input code and output folders are provided in their corresponding README file.
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+Additional information regarding each folder and files in the input code and output folders is provided in their corresponding README file.
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arefks