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+{
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+ "cells": [
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+ {
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+ "cell_type": "code",
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+ "execution_count": 2,
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+ "id": "4001a375",
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+ "metadata": {},
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+ "outputs": [],
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+ "source": [
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+ "import sys, os\n",
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+ "sys.path.append(os.path.join(os.getcwd(), '..'))\n",
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+ "sys.path.append(os.path.join(os.getcwd(), '..', '..'))"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 3,
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+ "id": "570920e2",
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stderr",
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+ "output_type": "stream",
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+ "text": [
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+ "2024-03-18 13:39:12.851112: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA\n",
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+ "To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.\n",
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+ "2024-03-18 13:39:14.712598: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory\n",
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+ "2024-03-18 13:39:14.712619: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.\n",
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+ "2024-03-18 13:39:14.799868: E tensorflow/stream_executor/cuda/cuda_blas.cc:2981] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered\n",
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+ "2024-03-18 13:39:15.784361: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer.so.7'; dlerror: libnvinfer.so.7: cannot open shared object file: No such file or directory\n",
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+ "2024-03-18 13:39:15.784627: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer_plugin.so.7'; dlerror: libnvinfer_plugin.so.7: cannot open shared object file: No such file or directory\n",
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+ "2024-03-18 13:39:15.784638: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Cannot dlopen some TensorRT libraries. If you would like to use Nvidia GPU with TensorRT, please make sure the missing libraries mentioned above are installed properly.\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "%matplotlib inline\n",
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+ "\n",
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+ "from session.sessions import selected_009266, selected_008229, selected_009265\n",
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+ "from imports import *\n",
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+ "from loading import load_session_data\n",
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+ "from behavior import get_behav_units\n",
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+ "from scipy import stats\n",
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+ "from scipy import signal\n",
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+ "from sklearn.preprocessing import StandardScaler, MinMaxScaler\n",
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+ "from sklearn import decomposition\n",
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+ "from sklearn.cluster import DBSCAN\n",
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+ "\n",
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+ "from umap import UMAP # conda install -c conda-forge umap-learn\n",
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+ "from sklearn.manifold import TSNE"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 26,
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+ "id": "26ba4176",
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "data": {
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+ "application/javascript": [
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+ "IPython.OutputArea.prototype._should_scroll = function(lines) {\n",
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+ " return false;\n",
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+ "}\n"
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+ ],
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+ "text/plain": [
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+ "<IPython.core.display.Javascript object>"
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+ ]
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+ },
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+ "metadata": {},
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+ "output_type": "display_data"
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+ }
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+ ],
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+ "source": [
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+ "%%javascript\n",
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+ "IPython.OutputArea.prototype._should_scroll = function(lines) {\n",
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+ " return false;\n",
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+ "}"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 29,
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+ "id": "4daf16cf",
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+ "metadata": {
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+ "scrolled": true
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+ },
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+ "outputs": [
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+ {
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+ "data": {
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+ "text/plain": [
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+ "['009266_hippoSIT_2023-04-17_17-04-17',\n",
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+ " '009266_hippoSIT_2023-04-18_10-10-37',\n",
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+ " '009266_hippoSIT_2023-04-18_17-03-10',\n",
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+ " '009266_hippoSIT_2023-04-19_10-33-51',\n",
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+ " '009266_hippoSIT_2023-04-20_08-57-39',\n",
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+ " '009266_hippoSIT_2023-04-20_15-24-14',\n",
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+ " '009266_hippoSIT_2023-04-21_08-43-00',\n",
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+ " '009266_hippoSIT_2023-04-21_13-12-31',\n",
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+ " '009266_hippoSIT_2023-04-24_10-08-11',\n",
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+ " '009266_hippoSIT_2023-04-24_16-56-55',\n",
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+ " '009266_hippoSIT_2023-04-26_08-20-17',\n",
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+ " '009266_hippoSIT_2023-05-02_12-22-14',\n",
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+ " '009266_hippoSIT_2023-05-04_19-47-15',\n",
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+ " '009266_hippoSIT_2023-05-22_09-27-22',\n",
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+ " '009266_hippoSIT_2023-05-23_09-18-05',\n",
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+ " '009266_hippoSIT_2023-05-25_15-55-57',\n",
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+ " '009266_hippoSIT_2023-06-14_08-21-23',\n",
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+ " '009266_hippoSIT_2023-06-19_08-58-35']"
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+ ]
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+ },
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+ "execution_count": 29,
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+ "metadata": {},
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+ "output_type": "execute_result"
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+ }
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+ ],
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+ "source": [
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+ "source = '/home/sobolev/nevermind/AG_Pecka/data/processed/'\n",
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+ "\n",
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+ "sessions = [s for s in selected_009266.keys()]\n",
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+ "#sessions = [s for s in selected_008229.keys()]\n",
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+ "sessions.sort()\n",
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+ "\n",
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+ "selected = sessions[:]\n",
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+ "selected"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 30,
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+ "id": "a79a90e7",
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+ "metadata": {},
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+ "outputs": [],
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+ "source": [
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+ "def get_ratio_matrix(moseq, tl, win_l=2, step=1, s_rate=100, syl_num=10):\n",
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+ " idxs_srm_tl = np.arange(0, len(tl), int(step*s_rate))\n",
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+ " syl_ratio_mx = np.zeros([len(idxs_srm_tl), syl_num])\n",
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+ " for k, idx in enumerate(idxs_srm_tl):\n",
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+ " curr_syls = moseq[:, 1][idx:idx + int(win_l*s_rate)] # second column is syllables reindexed\n",
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+ " for j in np.arange(syl_num):\n",
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+ " syl_ratio_mx[k, j] = np.sum(curr_syls == j) / int(win_l*s_rate)\n",
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+ "\n",
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+ " # roll 1 step to match\n",
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+ " syl_ratio_mx = np.roll(syl_ratio_mx, 1, axis=0)\n",
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+ " syl_ratio_mx[0] = syl_ratio_mx[1]\n",
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+ " \n",
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+ " return syl_ratio_mx, idxs_srm_tl"
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+ ]
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+ },
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+ {
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+ "cell_type": "markdown",
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+ "id": "5e6efd25",
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+ "metadata": {},
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+ "source": [
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+ "## t-SNE / UMAP for first 10 syllables"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 31,
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+ "id": "afac7c90",
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+ "metadata": {
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+ "scrolled": false
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+ },
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+ "outputs": [
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+ {
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+ "name": "stderr",
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+ "output_type": "stream",
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+ "text": [
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
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+ ]
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+ },
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "009266_hippoSIT_2023-04-17_17-04-17\n"
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+ ]
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+ },
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+ {
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+ "name": "stderr",
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+ "output_type": "stream",
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+ "text": [
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
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+ ]
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+ },
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "009266_hippoSIT_2023-04-18_10-10-37\n"
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+ ]
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+ },
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+ {
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+ "name": "stderr",
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+ "output_type": "stream",
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+ "text": [
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
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+ " warnings.warn(\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
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+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
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|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-18_17-03-10\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-19_10-33-51\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-20_08-57-39\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-20_15-24-14\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-21_08-43-00\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-21_13-12-31\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-24_10-08-11\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-24_16-56-55\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-04-26_08-20-17\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-05-02_12-22-14\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-05-04_19-47-15\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-05-22_09-27-22\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-05-23_09-18-05\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-05-25_15-55-57\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-06-14_08-21-23\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stderr",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:800: FutureWarning: The default initialization in TSNE will change from 'random' to 'pca' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/sklearn/manifold/_t_sne.py:810: FutureWarning: The default learning rate in TSNE will change from 200.0 to 'auto' in 1.2.\n",
|
|
|
+ " warnings.warn(\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n",
|
|
|
+ "/home/sobolev/projects/pySIT/lib/python3.8/site-packages/umap/umap_.py:1943: UserWarning: n_jobs value -1 overridden to 1 by setting random_state. Use no seed for parallelism.\n",
|
|
|
+ " warn(f\"n_jobs value {self.n_jobs} overridden to 1 by setting random_state. Use no seed for parallelism.\")\n"
|
|
|
+ ]
|
|
|
+ },
|
|
|
+ {
|
|
|
+ "name": "stdout",
|
|
|
+ "output_type": "stream",
|
|
|
+ "text": [
|
|
|
+ "009266_hippoSIT_2023-06-19_08-58-35\n"
|
|
|
+ ]
|
|
|
+ }
|
|
|
+ ],
|
|
|
+ "source": [
|
|
|
+ "umap_dists = [0.1, 0.3, 0.5, 0.7]\n",
|
|
|
+ "perplexities = [20, 50, 70, 100]\n",
|
|
|
+ "umap_fits = {}\n",
|
|
|
+ "tsne_fits = {}\n",
|
|
|
+ "idxs_srm_succ_all = {}\n",
|
|
|
+ "idxs_srm_fail_all = {}\n",
|
|
|
+ "win_l, step = 2, 0.5 # in seconds\n",
|
|
|
+ " \n",
|
|
|
+ "for i, session in enumerate(selected):\n",
|
|
|
+ " # load data\n",
|
|
|
+ " animal = session.split('_')[0]\n",
|
|
|
+ " moseq_file = os.path.join(source, animal, session, 'MoSeq.h5')\n",
|
|
|
+ " meta_file = os.path.join(source, animal, session, 'meta.h5')\n",
|
|
|
+ " moseq_class_file = os.path.join(source, animal, session, 'analysis', 'MoSeq_class_%s.h5' % str(int(step*1000)))\n",
|
|
|
+ " \n",
|
|
|
+ " with h5py.File(moseq_file, 'r') as f:\n",
|
|
|
+ " moseq = np.array(f['moseq'])\n",
|
|
|
+ " headers = list(f['moseq'].attrs['headers'])\n",
|
|
|
+ "\n",
|
|
|
+ " with h5py.File(meta_file, 'r') as f:\n",
|
|
|
+ " tl = np.array(f['processed']['timeline'])\n",
|
|
|
+ " tgt_mx = np.array(f['processed']['target_matrix'])\n",
|
|
|
+ " \n",
|
|
|
+ " syl_ratio_mx, idxs_srm_tl = get_ratio_matrix(moseq, tl, win_l=win_l, step=step)\n",
|
|
|
+ " \n",
|
|
|
+ " # indices of syllable ratio matrix when animal was successfully sitting\n",
|
|
|
+ " # in the island\n",
|
|
|
+ " idxs_srm_succ = []\n",
|
|
|
+ " for tgt_rec in tgt_mx[tgt_mx[:, 4] == 1]:\n",
|
|
|
+ " tl_l, tl_r = tgt_rec[2], tgt_rec[3]\n",
|
|
|
+ " idxs_srm_succ += list(np.where((idxs_srm_tl > tl_l) & (idxs_srm_tl < tl_r))[0])\n",
|
|
|
+ " idxs_srm_succ_all[session] = idxs_srm_succ\n",
|
|
|
+ " \n",
|
|
|
+ " idxs_srm_fail = []\n",
|
|
|
+ " for tgt_rec in tgt_mx[tgt_mx[:, 4] == 0]:\n",
|
|
|
+ " tl_l, tl_r = tgt_rec[2], tgt_rec[3]\n",
|
|
|
+ " idxs_srm_fail += list(np.where((idxs_srm_tl > tl_l) & (idxs_srm_tl < tl_r))[0])\n",
|
|
|
+ " idxs_srm_fail_all[session] = idxs_srm_fail\n",
|
|
|
+ " \n",
|
|
|
+ " tsne_fits[session] = {}\n",
|
|
|
+ " for perp in perplexities:\n",
|
|
|
+ " tsne = TSNE(n_components=2, perplexity=perp, random_state=0)\n",
|
|
|
+ " tsne_fit = tsne.fit_transform(syl_ratio_mx)\n",
|
|
|
+ " tsne_fits[session][perp] = tsne_fit\n",
|
|
|
+ " \n",
|
|
|
+ " umap_fits[session] = {}\n",
|
|
|
+ " for dist in umap_dists:\n",
|
|
|
+ " umap_2d = UMAP(n_components=2, n_neighbors=30, min_dist=dist, random_state=0)\n",
|
|
|
+ " umap_fit = umap_2d.fit_transform(syl_ratio_mx)\n",
|
|
|
+ " umap_fits[session][dist] = umap_fit\n",
|
|
|
+ "\n",
|
|
|
+ " with h5py.File(moseq_class_file, 'w') as f:\n",
|
|
|
+ " f.create_dataset('syl_ratio_mx', data=syl_ratio_mx)\n",
|
|
|
+ " f.create_dataset('idxs_srm_tl', data=idxs_srm_tl)\n",
|
|
|
+ " f.create_group('tSNE')\n",
|
|
|
+ " for perp in perplexities:\n",
|
|
|
+ " f['tSNE'].create_dataset(str(perp), data=tsne_fits[session][perp])\n",
|
|
|
+ " f.create_group('UMAP')\n",
|
|
|
+ " for dist in umap_dists:\n",
|
|
|
+ " f['UMAP'].create_dataset(str(dist), data=umap_fits[session][dist])\n",
|
|
|
+ " \n",
|
|
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+ " print(session)"
|
|
|
+ ]
|
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+ },
|
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+ {
|
|
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+ "cell_type": "code",
|
|
|
+ "execution_count": null,
|
|
|
+ "id": "c7e18306",
|
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|
+ "metadata": {},
|
|
|
+ "outputs": [],
|
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|
+ "source": []
|
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+ },
|
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+ {
|
|
|
+ "cell_type": "code",
|
|
|
+ "execution_count": null,
|
|
|
+ "id": "1b94ed02",
|
|
|
+ "metadata": {},
|
|
|
+ "outputs": [],
|
|
|
+ "source": []
|
|
|
+ }
|
|
|
+ ],
|
|
|
+ "metadata": {
|
|
|
+ "kernelspec": {
|
|
|
+ "display_name": "Python 3 (ipykernel)",
|
|
|
+ "language": "python",
|
|
|
+ "name": "python3"
|
|
|
+ },
|
|
|
+ "language_info": {
|
|
|
+ "codemirror_mode": {
|
|
|
+ "name": "ipython",
|
|
|
+ "version": 3
|
|
|
+ },
|
|
|
+ "file_extension": ".py",
|
|
|
+ "mimetype": "text/x-python",
|
|
|
+ "name": "python",
|
|
|
+ "nbconvert_exporter": "python",
|
|
|
+ "pygments_lexer": "ipython3",
|
|
|
+ "version": "3.8.10"
|
|
|
+ }
|
|
|
+ },
|
|
|
+ "nbformat": 4,
|
|
|
+ "nbformat_minor": 5
|
|
|
+}
|
asobolev