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+<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
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+<html><head><title>Python: module mnetonix</title>
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+<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
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+</head><body bgcolor="#f0f0f8">
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+
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+<table width="100%" cellspacing=0 cellpadding=2 border=0 summary="heading">
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+<tr bgcolor="#7799ee">
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+<td valign=bottom> <br>
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+<font color="#ffffff" face="helvetica, arial"> <br><big><big><strong>mnetonix</strong></big></big></font></td
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+><td align=right valign=bottom
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+><font color="#ffffff" face="helvetica, arial"><a href=".">index</a><br><a href="file:/Users/achilleas/code/pilsen-workshop/DataConversionToNIX/mnetonix.py">/Users/achilleas/code/pilsen-workshop/DataConversionToNIX/mnetonix.py</a></font></td></tr></table>
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+ <p><tt>mnetonix.py<br>
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+ <br>
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+Usage:<br>
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+python mnetonix.py <datafile> <montage><br>
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+ <br>
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+- datafile: Either an EDF file or a BrainVision header file (vhdr).<br>
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+- montage: Any format montage file supported by MNE.<br>
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+ <br>
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+(Requires Python 3)<br>
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+ <br>
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+Command line script for reading EDF and BrainVision files using MNE<br>
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+(mne-python) and storing the data and metadata into a NIX file. Supports<br>
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+reading montage files for recording channel locations.<br>
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+ <br>
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+NIX Format layout:<br>
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+ <br>
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+Data:<br>
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+Raw Data are stored in either a single 2-dimensional DataArray or a collection<br>
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+of DataArrays (one per recording channel). The latter makes tagging easier<br>
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+since MultiTag positions and extents don't need to specify every channel they<br>
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+reference. However, creating multiple DataArrays makes file sizes much<br>
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+bigger.<br>
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+ <br>
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+Stimuli:<br>
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+MNE provides stimulus information through the Raw.annotations dictionary.<br>
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+Onsets correspond to the 'positions' array and durations correspond to the<br>
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+'extents' array of the "Stimuli" MultiTag.<br>
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+ <br>
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+Metadata:<br>
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+MNE collects metadata into a (nested) dictionary (Raw.info). All non-empty<br>
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+keys are converted into Properties in NIX. The nested structure of the<br>
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+dictionary is replicated in NIX by creating child Sections, starting with one<br>
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+root section with name "Info".</tt></p>
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+<p>
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+<table width="100%" cellspacing=0 cellpadding=2 border=0 summary="section">
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+<tr bgcolor="#aa55cc">
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+<td colspan=3 valign=bottom> <br>
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+<font color="#ffffff" face="helvetica, arial"><big><strong>Modules</strong></big></font></td></tr>
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+
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+<tr><td bgcolor="#aa55cc"><tt> </tt></td><td> </td>
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+<td width="100%"><table width="100%" summary="list"><tr><td width="25%" valign=top><a href="mne.html">mne</a><br>
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+<a href="nixio.html">nixio</a><br>
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+</td><td width="25%" valign=top><a href="numpy.html">numpy</a><br>
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+<a href="os.html">os</a><br>
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+</td><td width="25%" valign=top><a href="matplotlib.pyplot.html">matplotlib.pyplot</a><br>
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+<a href="sys.html">sys</a><br>
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+</td><td width="25%" valign=top></td></tr></table></td></tr></table><p>
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+<table width="100%" cellspacing=0 cellpadding=2 border=0 summary="section">
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+<tr bgcolor="#eeaa77">
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+<td colspan=3 valign=bottom> <br>
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+<font color="#ffffff" face="helvetica, arial"><big><strong>Functions</strong></big></font></td></tr>
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+
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+<tr><td bgcolor="#eeaa77"><tt> </tt></td><td> </td>
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+<td width="100%"><dl><dt><a name="-create_md_tree"><strong>create_md_tree</strong></a>(section, values)</dt></dl>
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+ <dl><dt><a name="-main"><strong>main</strong></a>()</dt></dl>
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+ <dl><dt><a name="-plot_channel"><strong>plot_channel</strong></a>(data_array, index)</dt></dl>
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+ <dl><dt><a name="-write_multi_da"><strong>write_multi_da</strong></a>(mneraw, block)</dt></dl>
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+ <dl><dt><a name="-write_raw_mne"><strong>write_raw_mne</strong></a>(nfname, mneraw, split_data_channels=True)</dt></dl>
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+ <dl><dt><a name="-write_single_da"><strong>write_single_da</strong></a>(mneraw, block)</dt></dl>
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+ <dl><dt><a name="-write_stim_tags"><strong>write_stim_tags</strong></a>(mneraw, block)</dt></dl>
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+</td></tr></table><p>
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+<table width="100%" cellspacing=0 cellpadding=2 border=0 summary="section">
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+<tr bgcolor="#55aa55">
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+<td colspan=3 valign=bottom> <br>
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+<font color="#ffffff" face="helvetica, arial"><big><strong>Data</strong></big></font></td></tr>
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+
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+<tr><td bgcolor="#55aa55"><tt> </tt></td><td> </td>
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+<td width="100%"><strong>RAW_DATA_TYPE</strong> = 'Raw Data'</td></tr></table>
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+</body></html>
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