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added requirements

mvonpapen 5 years ago
parent
commit
caf48296e9
1 changed files with 15 additions and 12 deletions
  1. 15 12
      NetworkUnit_examples.ipynb

+ 15 - 12
NetworkUnit_examples.ipynb

@@ -38,7 +38,10 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Setup <a id='setup'></a>"
+    "# Setup <a id='setup'></a>\n",
+    "## Requirements\n",
+    "* This notebook works with Python 2.7. The required modules are listed in `requirements.txt` within the gin repository **network_validation**.\n",
+    "* *git-annex* is needed to load the experimental data from the gin repository **multielectrode_grasp**."
    ]
   },
   {
@@ -114,20 +117,20 @@
    ],
    "source": [
     "# Clone repository (this will not download large data files)\n",
-    "!gin get doi/multielectrode_grasp\n",
+    "!git clone git@gin.g-node.org:/doi/multielectrode_grasp\n",
     "\n",
     "# download large data files needed for this example\n",
     "os.chdir('./multielectrode_grasp')\n",
-    "!gin get-content ./datasets/l101210-001.odml # metadata for monkey L\n",
-    "!gin get-content ./datasets/l101210-001.ns2 # analog signals for monkey L\n",
-    "!gin get-content ./datasets/l101210-001.ccf\n",
-    "!gin get-content ./datasets/l101210-001.nev # unsorted spike times for monkey L\n",
-    "!gin get-content ./datasets/l101210-001-02.nev # sorted spike times for monkey L\n",
-    "!gin get-content ./datasets/i140703-001.odml # metadata for monkey I\n",
-    "!gin get-content ./datasets/i140703-001.ns2 # analog signals monkey I\n",
-    "!gin get-content ./datasets/i140703-001.ccf\n",
-    "!gin get-content ./datasets/i140703-001.nev # unsorted spike times for monkey I\n",
-    "!gin get-content ./datasets/i140703-001-03.nev # sorted spike times for monkey I\n",
+    "!git-annex get-content ./datasets/l101210-001.odml # metadata for monkey L\n",
+    "!git-annex get-content ./datasets/l101210-001.ns2 # analog signals for monkey L\n",
+    "!git-annex get-content ./datasets/l101210-001.ccf\n",
+    "!git-annex get-content ./datasets/l101210-001.nev # unsorted spike times for monkey L\n",
+    "!git-annex get-content ./datasets/l101210-001-02.nev # sorted spike times for monkey L\n",
+    "!git-annex get-content ./datasets/i140703-001.odml # metadata for monkey I\n",
+    "!git-annex get-content ./datasets/i140703-001.ns2 # analog signals monkey I\n",
+    "!git-annex get-content ./datasets/i140703-001.ccf\n",
+    "!git-annex get-content ./datasets/i140703-001.nev # unsorted spike times for monkey I\n",
+    "!git-annex get-content ./datasets/i140703-001-03.nev # sorted spike times for monkey I\n",
     "os.chdir('..')\n",
     "\n",
     "# add to path\n",