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- # Config file for Stage 5 - Channel-wise Wave Characterization
- # Name of stage, must be identical with folder name
- STAGE_NAME: 'stage05_channel_wave_characterization'
- # The profile name is the key for this parameter configuration. Results are stored in output_path/<PROFILE>/ (output_path is defined in settings.py)
- PROFILE: 'LENS'
- # Name of the output file
- STAGE_OUTPUT: 'wavefronts_channel-wise_measures.csv'
- # If True (default), the output file of a stage is created as symbolic link
- # to the last block output. If False, a duplicate is created (e.g. for cloud
- # application, where sym-links are not supported).
- USE_LINK_AS_STAGE_OUTPUT: True
- # Plotting parameters
- PLOT_TSTART: 0 # in s
- PLOT_TSTOP: 10 # in s
- PLOT_CHANNELS: 'None' # int or None. default 'None' -> randomly selected
- PLOT_FORMAT: 'png'
- # Wave event name
- # 'wavefronts', 'wavemodes'
- EVENT_NAME: 'wavefronts'
- # Measures to compute
- # 'velocity_local', 'direction_local', 'inter_wave_interval_local', 'annotations'
- MEASURES: ['annotations', 'velocity_local', 'direction_local',
- 'flow_direction_local', 'inter_wave_interval_local']
- # Velocity/Direction local
- ################
- # simple_3x3, prewitt_3x3, scharr_3x3, sobel_3x3, sobel_5x5, sobel_7x7
- KERNEL: 'scharr_3x3'
- INTERPOLATE: True
- # smoothing factor for the interpolation (0 = no smoothing)
- SMOOTHING: 109
- # Annotations
- #############
- # Use include_keys, if they are empty apply ignore_keys
- INCLUDE_KEYS: ['wavemode', 'spatial_scale', 'anesthetic', 'concentration',
- 'doi', 'disease_model', 'model_type', 'technique',
- 'x_coords', 'y_coords', 'macro_pixel_dim']
- IGNORE_KEYS: ['cluster_algorithm', 'cluster_eps', 'cluster_metric',
- 'cluster_min_samples', 'threshold', 'experimental_lab',
- 'psd_freq_res', 'psd_overlap', 'psd_fs'
- ]
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