gin commit from PC0W9KFR

New files: 352

cobrawap_output/IDIBAPS_WBS_WT4/stage01_data_entry/IDIBAPS_WBS_WT4/IDIBAPS_WBS_WT4.nix

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+/annex/objects/MD5-s247726147--c5d4e4799a2422459beeab3582a2e52a

cobrawap_output/IDIBAPS_WBS_WT4/stage01_data_entry/data.nix

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+/home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage01_data_entry/IDIBAPS_WBS_WT4/IDIBAPS_WBS_WT4.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage01_data_entry/working_config.yaml

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+# Config file for Stage 1 - Data Entry
+
+# Name of stage, must be identical with folder name
+STAGE_NAME: stage01_data_entry
+
+# The profile name is the key for this parameter configuration. Results are stored in output_path/<PROFILE>/ (output_path is defined in settings.py)
+PROFILE: IDIBAPS_WBS_WT4
+
+# Name of stage output file.
+STAGE_OUTPUT: data.nix
+
+# File format in which all intermediate neo objects are stored
+NEO_FORMAT: nix
+
+# If True (default), the output file of a stage is created as symbolic link
+# to the last block output. If False, a duplicate is created (e.g. for cloud
+# application, where sym-links are not supported).
+USE_LINK_AS_STAGE_OUTPUT: true
+
+# Datasets which should be processed with identical settings.
+# To set as key-value pairs
+# Name_of_dataset: /path/to/data/files/
+DATA_SETS:
+    IDIBAPS_WBS_WT4: 
+        /home/rgutzen/Sciebo/Slow_Wave_Analysis_Pipeline/Data/IDIBAPS_WBS/data-originals/WBS/WT/cond-WBS_type-WT_sub-4/hbp-01853_cond-WBS_type-WT_sub-4_chs-32_area-ALL_hem-RH_ana-K100M13_stim-SPN.smr
+    # IDIBAPS_WBS_WT4: '/projects/wavescalephant/Data/IDIBAPS_WBS/data-originals/WBS/WT/cond-WBS_type-WT_sub-4/hbp-01853_cond-WBS_type-WT_sub-4_chs-32_area-ALL_hem-RH_ana-K100M13_stim-SPN.smr'
+
+CURATION_SCRIPT: curate_IDIBAPS_data.py
+
+# Plot settings
+PLOT_TSTART: 0  # in s
+PLOT_TSTOP: 10  # in s
+PLOT_CHANNELS: [1, 2, 3] # int, list of ints, or 'None' (default) -> picks channel by random
+PLOT_FORMAT: png
+
+# pixel size
+SPATIAL_SCALE: 0.55  # mm
+
+# specified in the data file
+SAMPLING_RATE: None   # Hz
+
+# time slice in s
+# if None, the entire recording is used
+T_START: None
+T_STOP: None
+
+# recommend top: ventral
+ORIENTATION_TOP: ventral
+# recommended right: 'lateral' for right hemisphere, 'medial' for left hemisphere
+ORIENTATION_RIGHT: lateral
+
+# Metadata
+ANNOTATIONS:
+    technique: ecog
+    doi: 10.25493/DZWT-1T8
+    anesthetic: ketamine-medetomidine
+    concentration: 100 & 13 mg/kg
+    disease_model: WBS
+    model_type: WT
+
+ARRAY_ANNOTATIONS: None
+
+# The keyword arguments are passed as key value pairs.
+# Keywords must only contain letters, numbers, underscores, and spaces.
+# Values can be strings, int, float, bool, or None.
+# Values can also be aranged in 1D objects such as lists, or tuples
+# It is possible to specify nested subdict.
+KWARGS:
+    ELECTRODE_ANNOTATION_NAME: phy_chan
+    NAME2COORDS:
+        0: (0,1)
+        1: (6,4)
+        2: (3,3)
+        3: (4,3)
+        4: (5,3)
+        5: (6,3)
+        6: (7,3)
+        7: (8,3)
+        8: (1,2)
+        9: (2,2)
+        10: (3,2)
+        11: (4,2)
+        12: (5,2)
+        13: (6,2)
+        14: (7,2)
+        15: (8,2)
+        16: (7,0)
+        17: (1,1)
+        18: (2,1)
+        19: (3,1)
+        20: (4,1)
+        21: (5,1)
+        22: (6,1)
+        23: (7,1)
+        24: (8,1)
+        25: (0,0)
+        26: (1,0)
+        27: (2,0)
+        28: (3,0)
+        29: (4,0)
+        30: (5,0)
+        31: (6,0)
+    ELECTRODE_LOCATION:
+        Visual Cortex: [1, 4, 5, 6, 7, 12, 13, 14, 15, 21, 22, 23, 24]
+        Retrospenial Cortex: [16, 31, 30, 29]
+        Parietal Association Cortex: [3, 11, 20]
+        Somatosensory Cortex: [2, 8, 9, 10, 17, 18, 19]
+        Motor Cortex: [0, 25, 26, 27, 28]
+    ELECTRODE_COLOR: # color scheme to match to figures in publication
+        Visual Cortex: '#0C6BB1'
+        Retrospenial Cortex: '#422F58'
+        Parietal Association Cortex: '#01B24E'
+        Somatosensory Cortex: '#F92600'
+        Motor Cortex: '#EF6700'
+
+# dictionary mapping the channels (ELECTRODE_ANNOTATION_NAME) to their coordiantes on the grid (grid_size)
+STAGES:
+    - stage01_data_entry
+    - stage02_processing
+    - stage03_trigger_detection
+    - stage04_wave_detection
+    - stage05_wave_characterization
+QUALITY: 5
+SCALE_X: 720
+SCALE_Y: 720
+FPS: 18
+BITRATE: 20M
+FRAME_RATE: None
+COLORMAP: twilight
+PLOT_EVENT: wavefronts
+MARKER_COLOR: r
+STAGE_INPUT:

cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/background_subtraction/background_subtraction.nix

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+/annex/objects/MD5-s247730323--b1dd773d9d4557e82f7eff0e0044af3e

cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/detrending/detrending.nix

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+/annex/objects/MD5-s247730315--3d4d8d26882b20db3eddc00db04b2781

cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/normalization/normalization.nix

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+/annex/objects/MD5-s247734539--72019b65e598335f0e5be7a98a46fff6

cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/processed_data.nix

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+/home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/zscore/zscore.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/working_config.yaml

@@ -0,0 +1,108 @@
+# Config file for Stage 2 - Processing
+
+# Name of stage, must be identical with folder name
+STAGE_NAME: stage02_processing
+
+# The profile name is the key for this parameter configuration. Results are stored in output_path/<PROFILE>/ (output_path is defined in settings.py)
+PROFILE: IDIBAPS_WBS_WT4
+
+# Name of the output file
+STAGE_OUTPUT: processed_data.nix
+
+# File format in which all intermediate neo objects are stored
+NEO_FORMAT: nix
+
+# If True (default), the output file of a stage is created as symbolic link
+# to the last block output. If False, a duplicate is created (e.g. for cloud
+# application, where sym-links are not supported).
+USE_LINK_AS_STAGE_OUTPUT: true
+
+# Plotting parameters
+PLOT_TSTART: 0  # in s
+PLOT_TSTOP: 10  # in s
+PLOT_CHANNELS: [1, 2, 3] # int or None. default 'None' -> randomly selected
+PLOT_FORMAT: png
+
+# The block order determines which processing steps (blocks) will be applied
+# and in which order. Execution order is from first to last entry.
+# The available blocks are:
+# 'background_subtraction', 'frequency_filter', 'normalization', 'detrending',
+# 'roi_selection', 'logMUA_estimation', 'phase_transform', 'zscore'
+BLOCK_ORDER: [background_subtraction, detrending, normalization, logMUA_estimation,
+    zscore]
+
+# To make sure that the processing blocks are always executed in the correct
+# order that results from previous runs don't confound the workflow, all blocks
+# are rerun upon each execution. To turn this off, e.g., because the block order
+# didn't change, set to False (do with care!).
+RERUN_MODE: false
+
+# BLOCK - background_subtraction
+#################################
+# No parameters needed
+
+# BLOCK - spatial_smoothig
+#################################
+MACRO_PIXEL_DIM: 2
+
+# BLOCK - normalization
+#######################
+# Normalize the data (divide channels-wise) by either:
+# 'mean', 'median', 'max'
+NORMALIZE_BY: max
+
+# BLOCK - frequency_filter
+##########################
+# parameters to be passed to the butterworth frequency filter
+# function by elephant
+HIGHPASS_FREQUENCY: 200  # in Hz
+LOWPASS_FREQUENCY: 1500  # in Hz
+FILTER_ORDER: 2
+# filter function used in scipy backend.
+# options: ‘filtfilt’, 'lfilter’, ‘sosfiltfilt’
+FILTER_FUNCTION: sosfiltfilt
+# Plotting parameters for the power spectrum
+PSD_FREQUENCY_RESOLUTION: 5  # in Hz
+PSD_OVERLAP: 0.5
+
+# BLOCK - detrending
+####################
+# Detrending: 0 - mean detrending;
+#             1 - mean and slope detrending (linear): this should be the default.
+DETRENDING_ORDER: 1
+
+# BLOCK - img_roi_selection
+###########################
+# Threshold below which the pixels are discarded (set to nan).
+# Given in percent of the range between minimum and maximum intensity.
+INTENSITY_THRESHOLD: 0.5
+
+# BLOCK - logMUA_estimation
+########################
+MUA_HIGHPASS_FREQUENCY: 200  # in Hz
+MUA_LOWPASS_FREQUENCY: 1500  # in Hz
+# Rate of the logMUA signal. Must be <= the original sampling rate
+# in Hz (default: 'None', takes highpass_freq)
+logMUA_RATE: 100 #25
+# Length of time slice (in s) to estimate the local power spectrum
+# default 'None', takes minimum number of samples determined
+# by the lower bound of the frequency band
+FFT_SLICE: 0.3
+# PSD_OVERLAP: determined by setting in block frequency_filter
+STAGES:
+    - stage01_data_entry
+    - stage02_processing
+    - stage03_trigger_detection
+    - stage04_wave_detection
+    - stage05_wave_characterization
+QUALITY: 5
+SCALE_X: 720
+SCALE_Y: 720
+FPS: 18
+BITRATE: 20M
+FRAME_RATE: None
+COLORMAP: twilight
+PLOT_EVENT: wavefronts
+MARKER_COLOR: r
+STAGE_INPUT: 
+    /home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage01_data_entry/data.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage03_trigger_detection/trigger_times.nix

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+/home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage03_trigger_detection/remove_short_states/remove_short_states.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage03_trigger_detection/working_config.yaml

@@ -0,0 +1,104 @@
+# Config file for Stage 3 - Trigger Detection
+
+# Name of stage, must be identical with folder name
+STAGE_NAME: stage03_trigger_detection
+
+# The profile name is the key for this parameter configuration. Results are stored in output_path/<PROFILE>/ (output_path is defined in settings.py)
+PROFILE: IDIBAPS_WBS_WT4
+
+# Name of the stage output file
+STAGE_OUTPUT: trigger_times.nix
+
+# File format in which all intermediate neo objects are stored
+NEO_FORMAT: nix
+
+# If True (default), the output file of a stage is created as symbolic link
+# to the last block output. If False, a duplicate is created (e.g. for cloud
+# application, where sym-links are not supported).
+USE_LINK_AS_STAGE_OUTPUT: true
+
+# Plotting parameters
+PLOT_TSTART: 0  # in s
+PLOT_TSTOP: 10  # in s
+PLOT_CHANNELS: [1, 3, 10, 15] # int or None. default 'None' -> randomly selected
+PLOT_FORMAT: png
+
+# DETECTION BLOCK
+#################
+# Available Blocks: 'threshold', 'hilbert_phase', 'minima'
+DETECTION_BLOCK: threshold
+
+# TRIGGER FILTER
+#################
+# Available Blocks: 'remove_short_states'
+TRIGGER_FILTER: [remove_short_states]
+
+# BLOCK - Threshold
+###################
+# Thresholding method: 'fixed', 'fitted', 'moment'
+THRESHOLD_METHOD: fitted
+
+# Fitting Parameters
+# available fit functions: 'HalfGaussian', 'DoubleGaussian'
+# FirstGaussian: detects main peak (DOWN), fits Gaussian to left half, set threshold to mean + sigma x SIGMA_FACTOR
+# DoubleGaussian: Fits two Gaussians, threshold = central minima, or if no second peak mean1 + sigma1 x SIGMA_FACTOR
+FIT_FUNCTION: DoubleGaussian
+BIN_NUM: 100
+# Factor to multiply with the standard deviation
+# to determine threshold
+SIGMA_FACTOR: 2
+
+# Fixed Parameters
+FIXED_THRESHOLD: 0
+
+# Moment Parameters
+MOMENT_ORDER: 2
+MOMENT_FACTOR: 3
+
+# BLOCK - Hilbert_phase
+#######################
+# Phase at which to define the upward transition [-pi, 0]
+TRANSITION_PHASE: -1.570796
+
+# BLOCK - Minima
+################
+# Number of points to be used in the parabolic interpolation
+# 0 skips the interpolation (recommended)
+NUM_INTERPOLATION_POINTS: 0
+# minimum distance between two peaks (s)
+MIN_PEAK_DISTANCE: 0.28
+# amplitude fraction to set the threshold detecting local maxima
+MAXIMA_THRESHOLD_FRACTION: .5
+# time window to use to set the threshold detecting local maxima (s)
+MAXIMA_THRESHOLD_WINDOW: 3
+# minimum time the signal must be increasing after a minima candidate (s)
+MINIMA_PERSISTENCE: 0.16
+
+# BLOCK - Remove Short States
+#############################
+# minimum duration of UP and DOWN states (in s)
+# If there are no DOWN transitions, UP transitions are removed that are closer
+# than the sum of UP and DOWN durations.
+MIN_UP_DURATION: 0.02
+MIN_DOWN_DURATION: 0.2
+# If true, short down states are removed first, merging the neighboring up states.
+# Only then the remaining short up states are removed.
+# Applies only when down transitions are detected.
+REMOVE_DOWN_FIRST: true
+STAGES:
+    - stage01_data_entry
+    - stage02_processing
+    - stage03_trigger_detection
+    - stage04_wave_detection
+    - stage05_wave_characterization
+QUALITY: 5
+SCALE_X: 720
+SCALE_Y: 720
+FPS: 18
+BITRATE: 20M
+FRAME_RATE: None
+COLORMAP: twilight
+PLOT_EVENT: wavefronts
+MARKER_COLOR: r
+STAGE_INPUT: 
+    /home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage02_processing/processed_data.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage04_wave_detection/merge_wave_definitions/waves.nix

@@ -0,0 +1 @@
+/annex/objects/MD5-s17519317--bc6e9483560a8272f30366a1ecd5b684

cobrawap_output/IDIBAPS_WBS_WT4/stage04_wave_detection/optical_flow/optical_flow.nix

@@ -0,0 +1 @@
+/annex/objects/MD5-s16896337--ce8dae3fecb0ba4a41cd9b87fc22b20a

cobrawap_output/IDIBAPS_WBS_WT4/stage04_wave_detection/waves.nix

@@ -0,0 +1 @@
+/home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage04_wave_detection/merge_wave_definitions/waves.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage04_wave_detection/working_config.yaml

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+# Config file for Stage 4 - Wave Detection
+
+# Name of stage, must be identical with folder name
+STAGE_NAME: stage04_wave_detection
+
+# The profile name is the key for this parameter configuration. Results are stored in output_path/<PROFILE>/ (output_path is defined in settings.py)
+PROFILE: IDIBAPS_WBS_WT4
+
+# Name of the output file
+STAGE_OUTPUT: waves.nix
+
+# File format in which all intermediate neo objects are stored
+NEO_FORMAT: nix
+
+# If True (default), the output file of a stage is created as symbolic link
+# to the last block output. If False, a duplicate is created (e.g. for cloud
+# application, where sym-links are not supported).
+USE_LINK_AS_STAGE_OUTPUT: true
+
+# Plotting parameters
+PLOT_TSTART: 0  # in s
+PLOT_TSTOP: 10  # in s
+PLOT_CHANNELS: [1, 3, 10, 15] # int or None. default 'None' -> randomly selected
+PLOT_FORMAT: png
+
+# DETECTIION BLOCK
+##################
+# Available Blocks: 'trigger_clustering'
+DETECTION_BLOCK: trigger_clustering
+
+# ADDITIONAL PROPERTIES
+#######################
+# Available Blocks: 'optical_flow', 'critical_points', 'wave_mode_clustering'
+ADDITIONAL_PROPERTIES: [wave_mode_clustering, optical_flow]
+
+# Wavefront Clustering
+######################
+# Using sklearn.cluster.DBSCAN
+METRIC: euclidean
+# eps, maximum distance between points to be neighbors
+NEIGHBOUR_DISTANCE: 2.5
+MIN_SAMPLES_PER_WAVE: 8
+# Factor from time dimension to space dimension in sampling_rate*spatial_scale
+TIME_SPACE_RATIO: 0.25 # 1 # i.e. distance between 2 frames corresponds to X pixel
+
+# Optical Flow (Horn-Schunck algorithm)
+##############
+USE_PHASES: true
+# weight of the smoothness constraint over the brightness constancy constraint
+ALPHA: 1.5
+# maximum number of iterations optimizing the vector field
+MAX_NITER: 100
+# the optimization end either after MAX_NITER iteration or when the
+# maximal change between iterations is smaller than the CONVERGENCE_LIMIT
+CONVERGENCE_LIMIT: 0.0001
+# standard deviations for the Gaussian filter applied on the vector field
+# [t_std, x_std, y_std]. (0,0,0) for no filter
+GAUSSIAN_SIGMA: [2, 0.5, 0.5] # [2,0.5,0.5]
+# Kernel filter to use to calculate the spatial derivatives.
+# simple_3x3, prewitt_3x3, scharr_3x3, sobel_3x3, sobel_5x5, sobel_7x7
+DERIVATIVE_KERNEL: scharr_3x3
+
+# Critical Point Clustering
+###########################
+
+# Wave Mode Clustering
+######################
+# fraction of channels that need to be involved in a wave to be included
+MIN_TRIGGER_FRACTION: 0.5
+# number of similar waves to use to extrapolate missing trigger from
+NUM_WAVE_NEIGHBOURS: 5
+# percentage of wave similarity to keep for the clustering
+WAVE_OUTLIER_QUANTILE: 1 #0.95
+# number of pca dims to project the trigger patterns onto before clustering
+PCA_DIMS: 10
+# number of clusters for the kmeans algorithm
+NUM_KMEANS_CLUSTER: 4
+# grid spacing for the interpolation [0,1]
+INTERPOLATION_STEP_SIZE: 0.181818
+# smoothing factor (0: no smoothing)
+INTERPOLATION_SMOOTHING: 2
+
+# VIDEO SETTINGS
+################
+QUALITY: 5 # 0(good) - 31(bad)
+SCALE_X: 720
+SCALE_Y: 720
+FPS: 18
+BITRATE: 20M
+# displayed sampling rate, the data will be stretched or compressed to.
+# If None, the inherent sampling rate is used.
+FRAME_RATE: None
+# 'gray', 'viridis' (sequential), 'coolwarm' (diverging), 'twilight' (cyclic)
+COLORMAP: twilight
+PLOT_EVENT: wavefronts   # name of neo event to plot, default is None
+MARKER_COLOR: r
+STAGES:
+    - stage01_data_entry
+    - stage02_processing
+    - stage03_trigger_detection
+    - stage04_wave_detection
+    - stage05_wave_characterization
+STAGE_INPUT: 
+    /home/rgutzen/Projects/cobrawap_ms_code/cobrawap_output/IDIBAPS_WBS_WT4/stage03_trigger_detection/trigger_times.nix

cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/annotations/wavefronts_annotations.csv

@@ -0,0 +1,85 @@
+,wavefronts_id,spatial_scale_unit,spatial_scale,technique,doi,anesthetic,concentration,disease_model,model_type,wavemode,profile,sampling_rate,sampling_rate_unit,recording_length,recording_length_unit,dim_x,dim_y
+0,0,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+1,1,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+2,2,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+3,3,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+4,4,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+5,5,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,3,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+6,6,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,2,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+7,7,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,2,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+8,8,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+9,9,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,1,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+10,10,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,-1,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+11,11,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+12,12,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
+13,13,mm,0.55,ecog,10.25493/DZWT-1T8,ketamine-medetomidine,100 & 13 mg/kg,WBS,WT,0,IDIBAPS_WBS_WT4,101.23096857790735,Hz,138.2580864,s,5,9
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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/annotations/wavemodes_annotations.csv

@@ -0,0 +1,5 @@
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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/direction_planar/wavefronts_direction_planar.csv

@@ -0,0 +1,85 @@
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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/direction_planar/wavemodes_direction_planar.csv

@@ -0,0 +1,5 @@
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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/duration/wavefronts_duration.csv

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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/duration/wavemodes_duration.csv

@@ -0,0 +1,5 @@
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cobrawap_output/IDIBAPS_WBS_WT4/stage05_wave_characterization/inter_wave_interval/wavefronts_inter_wave_interval.csv

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