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Aswendt_Lab
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2024_Ruthe_SND
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2024_Ruthe_SND
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code
arefks ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all 3 هفته پیش
..
.ipynb_checkpoints e8e54e0207 current state: code is finished for representation 4 ماه پیش
AIDAmri @ 8e7f9d3597 13cb663094 added all of the code necessery 3 ماه پیش
mouse_connectivity e8e54e0207 current state: code is finished for representation 4 ماه پیش
Big_data_mouse_practical_2020_answer.ipynb e8e54e0207 current state: code is finished for representation 4 ماه پیش
GetQuantitativeValues.py 90c52b4a40 changed getquantitvevalues scode so that white matter tracts are added to the mix 1 ماه پیش
README.md 13cb663094 added all of the code necessery 3 ماه پیش
correlation_between_bahavior_and_DTI.py e702eb74fb adjusted code and ran it again 1 ماه پیش
correlation_between_bahavior_and_DTI_anovaSpecific.py 132437cf05 final results 1 ماه پیش
heat_maps_correlation.py e702eb74fb adjusted code and ran it again 1 ماه پیش
incooparate_behavior_data.py e702eb74fb adjusted code and ran it again 1 ماه پیش
mask2MTPL.py dfaee6412d applied mask2mtpl to whitematter mask 1 ماه پیش
overlayPlot.py 86fce3a119 current state: code is finished for representation 4 ماه پیش
plotting_quantitative_dti_values.py ff4909cb29 editet statistics to dunnett test to have only time effect control group not all verses all 3 هفته پیش
proof_of_modalities.py 9bcdec0ea4 added overlap percentage csv 2 ماه پیش
register_masks.py 748f48e806 changed the flip in the anat step of the registration, changed it back to before 1 ماه پیش
remapping_voiting_qc.py 18752865ca changed voitign with script to have additional columns 1 ماه پیش
statsmodel_training.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 1 ماه پیش
threshold_whitematter.py c5875af414 added white matter mask 1 ماه پیش
transpose_csv.py 63701b1cca code ready for: mixed model analysis and the post hoc tests nad figures with their relevant outputs. also code and results ready for heatmaps of the behavioral and dwi values correlations 1 ماه پیش
viralTracing2MTPL.py 2e82796756 added viraltracin 2 mtpl space filp function 3 ماه پیش

README.md

AIDAmri code

This is the code used to process raw Bruker data and to apply transformations from the drawn masks to each individual subject. Note that this is a subdataset linked to the GitHub page of AIDAmri.

The link to the exact branch of the code which was used for this process is: AIDAmri - SND_Mask_trafu branch.

Example usage of code

root@9c22c56092e5:/aida/DATA/code# python mask2MTPL.py -i /aida/DATA/output/Tract_Density -o /aida/DATA/output/Nifti_Tract_density_registered