Basic visual report

View of the background of the anatomical image

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-011_acq-original_desc-background_T2w.svg

Zoomed-in mosaic view of the brain

This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.

Get figure file: sub-001/figures/sub-001_ses-011_acq-original_desc-zoomed_T2w.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentsingularity
Input filename/sub-001/ses-011/anat/sub-001_ses-011_acq-original_T2w.nii.gz
VersionsMRIQC24.1.0.dev0+g3fe90466.d20240417
VersionsNiPype1.8.6
VersionsTemplateFlow24.2.0
md5sum92bb6a18af6c0be31731d3358f97f321
warningslarge_rot_frameTrue
warningssmall_air_maskFalse

AcquisitionMatrixPE320
AcquisitionNumber1
AcquisitionTime21:54:44.017500
BaseResolution320
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
DeviceSerialNumber67014
DwellTime2.2e-06
EchoTime0.413
EchoTrainLength248
FlipAngle120
HeudiconvVersion1.0.0
ImageOrientationPatientDICOM[-0.0272746, 0.996315, 0.0813122, 0.0485674, 0.0825671, -0.995401]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MFSPLIT']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImagingFrequency123.248
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressRue du Bugnon 21,Lausanne,District,CH,1011
InstitutionNameCHUV
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionFalse
ParallelReductionFactorInPlane3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectioni
PhaseEncodingSteps320
PhaseResolution1
PixelBandwidth710
ProcedureStepDescriptionRESEARCH Oscar
ProtocolNameanat-T2w__space
PulseSequenceDetails%SiemensSeq%\space
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE320
RefLinesPE24
RepetitionTime3.2
SAR0.12305
ScanOptionsPFP\PER
ScanningSequenceSE
SequenceName*spcR_282ns
SequenceVariantSP\SK
SeriesDescriptionanat-T2w__space_ND
SeriesNumber34
ShimSetting[8227, -5660, -6265, 329, -51, -148, 54, 19]
SliceThickness0.8
SoftwareVersionssyngo MR XA30
StationNameLRG10884
TxRefAmp242.543
dcmmetaaffine[[0.798799991607666, -0.02181968092918396, 0.03885392099618912, -98.4314193725586], [0.01899999938905239, 0.7970520257949829, 0.06605368107557297, -108.02970886230469], [-0.04050000011920929, -0.06504976004362106, 0.7963207960128784, -130.57666015625], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, 0.0, -1.0, 319.0], [0.0, -1.0, 0.0, 319.0], [-1.0, 0.0, 0.0, 239.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[240, 320, 320]
dcmmetaslice_dim0
dcmmetaversion0.6

cjv1.3530235576923078
cnr0.6748864823752522
efc0.4929
fber-1.0
fwhmavg2.684637459995784
fwhmx2.578174961582199
fwhmy2.910237456634083
fwhmz2.5654999617710716
icvscsf0.26667066999249056
icvsgm0.3553383192727468
icvswm0.37799101073476266
inumed0.9874757528305054
inurange0.3446997702121736
qi10.0
qi20.002390049604425153
rpvecsf8.358472981427534
rpvegm8.195942425699396
rpvewm8.228912836909354
sizex240
sizey320
sizez320
snrcsf1.5800795382889483
snrgm5.107664110418445
snrtotal4.455111903269196
snrwm6.677592061100195
snrdcsf31.555083874280264
snrdgm26.349295925477684
snrdtotal26.696348455397857
snrdwm22.184665566435616
spacingx0.800000011920929
spacingy0.800000011920929
spacingz0.800000011920929
summarybgk657.9644
summarybgmad0.0
summarybgmean3.9912
summarybgmedian0.0
summarybgn6858591.0
summarybgp050.0
summarybgp9517.0
summarybgstdv32.7204
summarycsfk-1.2188
summarycsfmad1549.8721
summarycsfmean1622.8923
summarycsfmedian1576.0
summarycsfn774737.7643283075
summarycsfp0597.0
summarycsfp953316.0
summarycsfstdv997.4175
summarygmk59.9138
summarygmmad153.9108
summarygmmean1313.1671
summarygmmedian1316.0
summarygmn1032337.0585197781
summarygmp05923.0
summarygmp951717.0
summarygmstdv257.6519
summarywmk101.1878
summarywmmad127.5181
summarywmmean1120.1917
summarywmmedian1108.0
summarywmn1098148.1788045673
summarywmp05891.0
summarywmp951377.0
summarywmstdv165.928
tpmoverlapcsf0.21570475048436155
tpmoverlapgm0.5144929099743724
tpmoverlapwm0.5278320441635782
wm2max0.2949754489920604
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